Bousios Lab

Publications

 

  • Wlodzimierz P, Rabanal FA, Burns R, Naish M, Primetis E, Scott A, Mandáková T, Gorringe N, Tock AJ, Holland D, Fritschi K, Habring A, Lanz C, Patel C, Schlegel T, Collenberg M, Mielke M, Nordborg M, Roux F, Shirsekar G, Alonso-Blanco C, Lysak MA, Novikova P, Bousios A, Weigel D, Henderson IR. Cycles of satellite and transposon evolution in Arabidopsis centromeres. Nature, 1-9, 2023.
  • GT Martin, E Solares, A Muyle, A Bousios, BS Gaut. Diverse patterns of secondary structure across genes and transposable elements are associated with siRNA production and epigenetic fate. bioRxiv 2022.
  • Dazeniere J*, Bousios A*, Eyre-Walker A. Patterns of selection in the evolution of a transposable element. G3 Genes|Genomes|Genetics 12(5), 2022.
  • Naish M, Alonge M, Wlodzimierz P, Tock AJ, Abramson BW, Schmücker A, Mandáková T, Jamge B, Lambing C, Kuo P, Yelina N, Hartwick N, Colt K, Smith LM, Ton J, Kakutani T, Martienssen RA, Schneeberger K, Lysak MA, Berger F, Bousios A, Michael TP, Schatz MC, Henderson IR. The genetic and epigenetic landscape of the Arabidopsis centromeres. Science 2021, 374 (6569), eabi7489.
  • Muyle A, Seymoor D, Darzentas N, Primetis E, Gaut BS, Bousios A. Gene capture by transposable elements leads to epigenetic conflict in maize. Molecular Plant 2021, 14 (2), 237-252.
  • Bousios A, Nuetzmann HW, Buck D, Michieletto D. Integrating Transposable Elements in the 3D Genome. Mobile DNA 2020.
  • Roessler K, Muyle A, Diez CM, Gaut GR, Bousios A, Stitzer M, Seymoor D, Doebley JF, Liu Q, Gaut BS. The genome-wide dynamics of purging during selfing in maize. Nature Plants 2019, 5(9), 980-990.
  • Roessler K, Bousios A, Meca E, Gaut BS. Modeling interactions between transposable elements and the plant epigenetic response: a surprising reliance on element retention. Genome Biology and Evolution 2018.
  • Bousios A, Gaut BS, Darzentas N. Considerations and complications of mapping small RNA high-throughput data to transposable elements. Mobile DNA 2017, 8 (1),3.
  • Bousios A, Gaut BS. Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts. Current Opinion in Plant Biology 2016, 30, 123-133.
  • Bousios A, Diez CM, Takuno S, Bystry V, Darzentas N, Gaut BS. A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response. Genome Research 2016, 26 (2), 226-237.
  • Bousios A, Darzentas N. Sirevirus LTR retrotransposons: phylogenetic misconceptions in the plant world. Mobile DNA 2013, 4 (1), 1-5.
  • Bousios A§¶, Minga E§, Kalitsou N, Pantermali M, Tsaballa A, Darzentas N. MASiVEdb: the Sirevirus Plant Retrotransposon Database. BMC Genomics 2012, 13 (1), 158.
  • Bousios A§¶, Kourmpetis YA, Pavlidis P, Minga E, Tsaftaris A, Darzentas N§. The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story. Plant Journal 2012, 69 (3), 475-488.
  • Bousios A, Voytas D, Peterson-Burch B. Hemivirus Pseudoviridae, The Springer Index of Viruses, Second Edition, C. Tidona and G. Darai (Eds.). 2012, Part 75, 1549-1553.
  • Laten HM and Bousios A. Sirevirus Pseudoviridae, The Springer Index of Viruses, Second Edition, C. Tidona and G. Darai (Eds.), 2012, Part 75, 1561-1564.
  • Darzentas N*, Bousios A*, Apostolidou V, Tsaftaris AS. MASiVE: Mapping and Analysis of SireVirus Elements in plant genome sequences. Bioinformatics 2010, 26 (19), 2452-2454.
  • Bousios A, Waxman D, Pearce SR. Absence of close-facing retrotransposons: A comparison of molecular data and theory. Journal of Theoretical Biology 2010, 264 (2), 205-210.
  • Bousios A, Darzentas N, Tsaftaris A, Pearce SR. Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants? BMC Genomics 2010, 11 (1), 89.
  • Bousios A, Saldana-Qyarzabal I, Valenzuela-Zapata AG, Wood C, Pearce SR. Isolation and characterization of Ty1-copia retrotransposon sequences in the blue agave (Agave tequilana Weber var. azul) and their development as SSAP markers for phylogenetic analysis. Plant Science 2007, 172 (2), 291-298.
* joint first author
§ contributed equally
 corresponding author