Bousios Lab

Publications

 

  • Roessler K, Muyle A, Diez CM, Gaut GR, Bousios A, Stitzer M, Seymoor D, Doebley JF, Liu Q, Gaut BS. The Genomics of Selfing in Maize (Zea mays ssp. mays): Catching Purging in the Act. BioRxiv 2019.
  • Roessler K, Bousios A, Meca E, Gaut BS. Modeling interactions between transposable elements and the plant epigenetic response: a surprising reliance on element retention. Genome Biology and Evolution 2018.
  • Bousios A, Gaut BS, Darzentas N. Considerations and complications of mapping small RNA high-throughput data to transposable elements. Mobile DNA 2017, 8 (1),3.
  • Bousios A, Gaut BS. Mechanistic and evolutionary questions about epigenetic conflicts between transposable elements and their plant hosts. Current Opinion in Plant Biology 2016, 30, 123-133.
  • Bousios A, Diez CM, Takuno S, Bystry V, Darzentas N, Gaut BS. A role for palindromic structures in the cis-region of maize Sirevirus LTRs in transposable element evolution and host epigenetic response. Genome Research 2016, 26 (2), 226-237.
  • Bousios A, Darzentas N. Sirevirus LTR retrotransposons: phylogenetic misconceptions in the plant world. Mobile DNA 2013, 4 (1), 1-5.
  • Bousios A§¶, Minga E§, Kalitsou N, Pantermali M, Tsaballa A, Darzentas N. MASiVEdb: the Sirevirus Plant Retrotransposon Database. BMC Genomics 2012, 13 (1), 158.
  • Bousios A§¶, Kourmpetis YA, Pavlidis P, Minga E, Tsaftaris A, Darzentas N§. The turbulent life of Sirevirus retrotransposons and the evolution of the maize genome: more than ten thousand elements tell the story. Plant Journal 2012, 69 (3), 475-488.
  • Bousios A, Voytas D, Peterson-Burch B. Hemivirus Pseudoviridae, The Springer Index of Viruses, Second Edition, C. Tidona and G. Darai (Eds.). 2012, Part 75, 1549-1553.
  • Laten HM and Bousios A. Sirevirus Pseudoviridae, The Springer Index of Viruses, Second Edition, C. Tidona and G. Darai (Eds.), 2012, Part 75, 1561-1564.
  • Darzentas N*, Bousios A*, Apostolidou V, Tsaftaris AS. MASiVE: Mapping and Analysis of SireVirus Elements in plant genome sequences. Bioinformatics 2010, 26 (19), 2452-2454.
  • Bousios A, Waxman D, Pearce SR. Absence of close-facing retrotransposons: A comparison of molecular data and theory. Journal of Theoretical Biology 2010, 264 (2), 205-210.
  • Bousios A, Darzentas N, Tsaftaris A, Pearce SR. Highly conserved motifs in non-coding regions of Sirevirus retrotransposons: the key for their pattern of distribution within and across plants? BMC Genomics 2010, 11 (1), 89.
  • Bousios A, Saldana-Qyarzabal I, Valenzuela-Zapata AG, Wood C, Pearce SR. Isolation and characterization of Ty1-copia retrotransposon sequences in the blue agave (Agave tequilana Weber var. azul) and their development as SSAP markers for phylogenetic analysis. Plant Science 2007, 172 (2), 291-298.
* joint first author
§ contributed equally
 corresponding author