ImageJ Plugins

The imaging workstations within the centre have several plugins installed for use with microscopy images. These can be accessed from the ImageJ Plugins menu.

LOCI The Bio-Formats plugin allows many different image formats to be read into ImageJ. Choose Plugins > LOCI > Bio-Formats Importer to load images
OMERO The OMERO plugin allows images to be read from an OMERO server into ImageJ
GDSC Contains analysis programs for microscopy images including colocalisation analysis and peak finding

See the GDSC plugins page for details of all the GDSC analysis tools.

Batch Processing

ImageJ can run a plugin on many images in a single batch process. Full details and examples of the batch functionality can be found in the ImageJ Batch Processing Guide.

For further details on GDSC ImageJ plugins please contact Alex Herbert.