The following software is often used by researchers. Most of this software is installed on the High Performance clusters but some programs are also available on other platforms.
ACML
AIMPRO
ALBERTA
AMBER
Ant Apache Software Library
ATLAS.ti
BOWTIE
CAMINO
CDO
CosmoMC
Dune
FFTW
Fiji
Freesurfer
FSL
Gap
GATK
GCC
GLoBES
GLTOOLS
GROMACS
IGV
JasPer
Java Development Kit (JDK)
Matlab Production Server
MGLTools
MOE
MRICONVERT
NCL NCARG
NetCDF
OpenCV
PPL
WMAP
Math Routines
The AMD Core Math Library (ACML) is a set of optimized and threaded math routines. It consists of the Basic Linear Algebra Subroutines.
ACML consists of the following main components:
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