The following software is often used by researchers. Most of this software is installed on the High Performance clusters but some programs are also available on other platforms.
ACML
AIMPRO
ALBERTA
AMBER
Ant Apache Software Library
ATLAS.ti
BOWTIE
CAMINO
CDO
CosmoMC
Dune
FFTW
Fiji
Freesurfer
FSL
Gap
GATK
GCC
GLoBES
GLTOOLS
GROMACS
IGV
JasPer
Java Development Kit (JDK)
Matlab Production Server
MGLTools
MOE
MRICONVERT
NCL NCARG
NetCDF
OpenCV
PPL
WMAP
Integrated Genomic Dataset Visualisation Tool
The integrated Genomics Viewer is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets, it supports a wide variety of data types, including array based and next generation sequence data. and genomic annotations.
The following links are to external sites (links open in a new tab):
Under GNU LGPL license
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