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Publication Type J
Authors Wen, M; Lin, XQ; Xie, MN; Wang, YS; Shen, X; Liufu, ZQ; Wu, CI; Shi, SH; Tang, T
Author Full Name Wen, Ming; Lin, Xingqin; Xie, Munan; Wang, Yushuai; Shen, Xu; Liufu, Zhongqi; Wu, Chung-I; Shi, Suhua; Tang, Tian
Title Small RNA transcriptomes of mangroves evolve adaptively in extreme environments
Source SCIENTIFIC REPORTS
Language English
Document Type Article
Keywords Plus DIFFERENTIAL EXPRESSION; STRESS RESPONSES; ARABIDOPSIS; MICRORNAS; GENOME; PLANTS; IDENTIFICATION; RESISTANCE; EFFICIENT; DATABASE
Abstract MicroRNAs (miRNAs) and endogenous small interfering RNAs (siRNAs) are key players in plant stress responses. Here, we present the sRNA transcriptomes of mangroves Bruguiera gymnorrhiza and Kandelia candel. Comparative computational analyses and target predictions revealed that mangroves exhibit distinct sRNA regulatory networks that differ from those of glycophytes. A total of 32 known and three novel miRNA families were identified. Conserved and mangrove-specific miRNA targets were predicted; the latter were widely involved in stress responses. The known miRNAs showed differential expression between the mangroves and glycophytes, reminiscent of the adaptive stress-responsive changes in Arabidopsis. B. gymnorrhiza possessed highly abundant but less conserved TAS3 trans-acting siRNAs (tasiRNAs) in addition to tasiR-ARFs, with expanded potential targets. Our results indicate that the evolutionary alteration of sRNA expression levels and the rewiring of sRNA-regulatory networks are important mechanisms underlying stress adaptation. We also identified sRNAs that are involved in salt and/or drought tolerance and nutrient homeostasis as possible contributors to mangrove success in stressful environments.
Author Address [Wen, Ming; Lin, Xingqin; Xie, Munan; Wang, Yushuai; Shen, Xu; Liufu, Zhongqi; Wu, Chung-I; Shi, Suhua; Tang, Tian] Sun Yat Sen Univ, Sch Life Sci, Guangdong Prov Key Lab Plant Resources, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China; [Wen, Ming; Lin, Xingqin; Xie, Munan; Wang, Yushuai; Shen, Xu; Liufu, Zhongqi; Wu, Chung-I; Shi, Suhua; Tang, Tian] Sun Yat Sen Univ, Sch Life Sci, Key Lab Biodivers Dynam & Conservat, Guangdong Higher Educ Inst, Guangzhou 510275, Guangdong, Peoples R China; [Wu, Chung-I] Univ Chicago, Dept Ecol & Evolut, 1101 E 57th St, Chicago, IL 60637 USA
Reprint Address Tang, T (reprint author), Sun Yat Sen Univ, Sch Life Sci, Guangdong Prov Key Lab Plant Resources, State Key Lab Biocontrol, Guangzhou 510275, Guangdong, Peoples R China.; Tang, T (reprint author), Sun Yat Sen Univ, Sch Life Sci, Key Lab Biodivers Dynam & Conservat, Guangdong Higher Educ Inst, Guangzhou 510275, Guangdong, Peoples R China.
E-mail Address lsstt@mail.sysu.edu.cn
Funding Agency and Grant Number National Science Foundation of China [31170308, 31130069, 91231117, 41130208, 31301010]; Science Foundation for Outstanding Young Teachers in Higher Education of Guangdong [Yq2013005]; General Financial Grant from the China Postdoctoral Science Foundation [2013M531981]
Funding Text This work was supported by the National Science Foundation of China (31170308, 31130069, 91231117, 41130208 and 31301010), the Science Foundation for Outstanding Young Teachers in Higher Education of Guangdong (Yq2013005) and the General Financial Grant from the China Postdoctoral Science Foundation (2013M531981). We thank Cairong Zhong for help with sample collection and Yang Shen for useful discussions.
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Publisher NATURE PUBLISHING GROUP
Publisher City LONDON
Publisher Address MACMILLAN BUILDING, 4 CRINAN ST, LONDON N1 9XW, ENGLAND
ISSN 2045-2322
29-Character Source Abbreviation SCI REP-UK
ISO Source Abbreviation Sci Rep
Publication Date JUN 9
Year Published 2016
Volume 6
Article Number 27551
Digital Object Identifier (DOI) 10.1038/srep27551
Page Count 12
Web of Science Category Multidisciplinary Sciences
Subject Category Science & Technology - Other Topics
Document Delivery Number DN8QC
Unique Article Identifier WOS:000377343200002
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