eHALOPH - Halophytes Database

Publication Type	J
Authors	Bai, SJ; Li, JW; He, ZL; Van Nostrand, JD; Tian, Y; Lin, GH; Zhou, JZ; Zheng, TL
Author Full Name	Bai, Shijie; Li, Jiangwei; He, Zhili; Van Nostrand, Joy D.; Tian, Yun; Lin, Guanghui; Zhou, Jizhong; Zheng, Tianling
Title	GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves
Source	APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
Language	English
Document Type	Article
Author Keywords	Mangroves; GeoChip; Functional gene; Microbial communities; Invasive species; Native species
Keywords Plus	16S RIBOSOMAL-RNA; GLOBAL CARBON-CYCLE; SEA OIL PLUME; MARINE-SEDIMENTS; REDUCTASE GENES; PARACOCCUS-PANTOTROPHUS; BACTERIAL COMMUNITIES; OXIDIZING BACTERIA; ORGANIC PHOSPHORUS; SALINITY GRADIENT
Abstract	Mangroves are unique and highly productive ecosystems and harbor very special microbial communities. Although the phylogenetic diversity of sediment microbial communities of mangrove habitats has been examined extensively, little is known regarding their functional gene diversity and metabolic potential. In this study, a high-throughput functional gene array (GeoChip 4.0) was used to analyze the functional diversity, composition, structure, and metabolic potential of microbial communities in mangrove habitats from mangrove national nature reserves in China. GeoChip data indicated that these microbial communities were functionally diverse as measured by the number of genes detected, unique genes, and various diversity indices. Almost all key functional gene categories targeted by GeoChip 4.0 were detected in the mangrove microbial communities, including carbon (C) fixation, C degradation, methane generation, nitrogen (N) fixation, nitrification, denitrification, ammonification, N reduction, sulfur (S) metabolism, metal resistance, antibiotic resistance, and organic contaminant degradation. Detrended correspondence analysis (DCA) of all detected genes showed that Spartina alterniflora (HH), an invasive species, did not harbor significantly different microbial communities from Aegiceras corniculatum (THY), a native species, but did differ from other species, Kenaelia candel (QQ), Aricennia marina (BGR), and mangrove-free mud flat (GT). Canonical correspondence analysis (CCA) results indicated the microbial community structure was largely shaped by surrounding environmental variables, such as total nitrogen (TN), total carbon (TC), pH, C/N ratio, and especially salinity. This study presents a comprehensive survey of functional gene diversity of soil microbial communities from different mangrove habitats/species and provides new insights into our understanding of the functional potential of microbial communities in mangrove ecosystems.
Author Address	[Bai, Shijie; Li, Jiangwei; Tian, Yun; Lin, Guanghui; Zheng, Tianling] Xiamen Univ, Sch Life Sci, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R China; [Bai, Shijie; Li, Jiangwei; Tian, Yun; Lin, Guanghui; Zheng, Tianling] Xiamen Univ, Sch Life Sci, Key Lab MOE Coast & Wetland Ecosyst, Xiamen 361005, Peoples R China; [Bai, Shijie; He, Zhili; Van Nostrand, Joy D.; Zhou, Jizhong] Univ Oklahoma, Inst Environm Genom, Norman, OK 73072 USA; [Bai, Shijie; He, Zhili; Van Nostrand, Joy D.; Zhou, Jizhong] Univ Oklahoma, Dept Bot & Microbiol, Norman, OK 73072 USA
Reprint Address	Zheng, TL (reprint author), Xiamen Univ, Sch Life Sci, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R China.
E-mail Address	jzhou@ou.edu; wshwzh@xmu.edu.cn
ResearcherID Number	Van Nostrand, Joy/F-1740-2016
ORCID Number	Van Nostrand, Joy/0000-0001-9548-6450
Funding Agency and Grant Number	National Nature Science Foundation [40930847, 30930017, 31070442]; public science and technology research funds projects of ocean [201305016, 201305041, 201305022]; Program for Changjiang Scholars and Innovative Research Team in University [41121091]
Funding Text	This work was supported by the National Nature Science Foundation (40930847, 30930017, 31070442), public science and technology research funds projects of ocean (201305016, 201305041, 201305022) and the Program for Changjiang Scholars and Innovative Research Team in University (41121091).
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Cited Reference Count	105
Times Cited	16
Total Times Cited Count (WoS, BCI, and CSCD)	17
Publisher	SPRINGER
Publisher City	NEW YORK
Publisher Address	233 SPRING ST, NEW YORK, NY 10013 USA
ISSN	0175-7598
29-Character Source Abbreviation	APPL MICROBIOL BIOT
ISO Source Abbreviation	Appl. Microbiol. Biotechnol.
Publication Date	AUG
Year Published	2013
Volume	97
Issue	15
Beginning Page	7035
Ending Page	7048
Digital Object Identifier (DOI)	10.1007/s00253-012-4496-z
Page Count	14
Web of Science Category	Biotechnology & Applied Microbiology
Subject Category	Biotechnology & Applied Microbiology
Document Delivery Number	180XO
Unique Article Identifier	WOS:000321632700038
Plants associated with this reference	Aegiceras corniculatum