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Publication Type J
Authors Bai, SJ; Li, JW; He, ZL; Van Nostrand, JD; Tian, Y; Lin, GH; Zhou, JZ; Zheng, TL
Author Full Name Bai, Shijie; Li, Jiangwei; He, Zhili; Van Nostrand, Joy D.; Tian, Yun; Lin, Guanghui; Zhou, Jizhong; Zheng, Tianling
Title GeoChip-based analysis of the functional gene diversity and metabolic potential of soil microbial communities of mangroves
Source APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
Language English
Document Type Article
Author Keywords Mangroves; GeoChip; Functional gene; Microbial communities; Invasive species; Native species
Keywords Plus 16S RIBOSOMAL-RNA; GLOBAL CARBON-CYCLE; SEA OIL PLUME; MARINE-SEDIMENTS; REDUCTASE GENES; PARACOCCUS-PANTOTROPHUS; BACTERIAL COMMUNITIES; OXIDIZING BACTERIA; ORGANIC PHOSPHORUS; SALINITY GRADIENT
Abstract Mangroves are unique and highly productive ecosystems and harbor very special microbial communities. Although the phylogenetic diversity of sediment microbial communities of mangrove habitats has been examined extensively, little is known regarding their functional gene diversity and metabolic potential. In this study, a high-throughput functional gene array (GeoChip 4.0) was used to analyze the functional diversity, composition, structure, and metabolic potential of microbial communities in mangrove habitats from mangrove national nature reserves in China. GeoChip data indicated that these microbial communities were functionally diverse as measured by the number of genes detected, unique genes, and various diversity indices. Almost all key functional gene categories targeted by GeoChip 4.0 were detected in the mangrove microbial communities, including carbon (C) fixation, C degradation, methane generation, nitrogen (N) fixation, nitrification, denitrification, ammonification, N reduction, sulfur (S) metabolism, metal resistance, antibiotic resistance, and organic contaminant degradation. Detrended correspondence analysis (DCA) of all detected genes showed that Spartina alterniflora (HH), an invasive species, did not harbor significantly different microbial communities from Aegiceras corniculatum (THY), a native species, but did differ from other species, Kenaelia candel (QQ), Aricennia marina (BGR), and mangrove-free mud flat (GT). Canonical correspondence analysis (CCA) results indicated the microbial community structure was largely shaped by surrounding environmental variables, such as total nitrogen (TN), total carbon (TC), pH, C/N ratio, and especially salinity. This study presents a comprehensive survey of functional gene diversity of soil microbial communities from different mangrove habitats/species and provides new insights into our understanding of the functional potential of microbial communities in mangrove ecosystems.
Author Address [Bai, Shijie; Li, Jiangwei; Tian, Yun; Lin, Guanghui; Zheng, Tianling] Xiamen Univ, Sch Life Sci, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R China; [Bai, Shijie; Li, Jiangwei; Tian, Yun; Lin, Guanghui; Zheng, Tianling] Xiamen Univ, Sch Life Sci, Key Lab MOE Coast & Wetland Ecosyst, Xiamen 361005, Peoples R China; [Bai, Shijie; He, Zhili; Van Nostrand, Joy D.; Zhou, Jizhong] Univ Oklahoma, Inst Environm Genom, Norman, OK 73072 USA; [Bai, Shijie; He, Zhili; Van Nostrand, Joy D.; Zhou, Jizhong] Univ Oklahoma, Dept Bot & Microbiol, Norman, OK 73072 USA
Reprint Address Zheng, TL (reprint author), Xiamen Univ, Sch Life Sci, State Key Lab Marine Environm Sci, Xiamen 361005, Peoples R China.
E-mail Address jzhou@ou.edu; wshwzh@xmu.edu.cn
ResearcherID Number Van Nostrand, Joy/F-1740-2016
ORCID Number Van Nostrand, Joy/0000-0001-9548-6450
Funding Agency and Grant Number National Nature Science Foundation [40930847, 30930017, 31070442]; public science and technology research funds projects of ocean [201305016, 201305041, 201305022]; Program for Changjiang Scholars and Innovative Research Team in University [41121091]
Funding Text This work was supported by the National Nature Science Foundation (40930847, 30930017, 31070442), public science and technology research funds projects of ocean (201305016, 201305041, 201305022) and the Program for Changjiang Scholars and Innovative Research Team in University (41121091).
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Cited Reference Count 105
Times Cited 16
Total Times Cited Count (WoS, BCI, and CSCD) 17
Publisher SPRINGER
Publisher City NEW YORK
Publisher Address 233 SPRING ST, NEW YORK, NY 10013 USA
ISSN 0175-7598
29-Character Source Abbreviation APPL MICROBIOL BIOT
ISO Source Abbreviation Appl. Microbiol. Biotechnol.
Publication Date AUG
Year Published 2013
Volume 97
Issue 15
Beginning Page 7035
Ending Page 7048
Digital Object Identifier (DOI) 10.1007/s00253-012-4496-z
Page Count 14
Web of Science Category Biotechnology & Applied Microbiology
Subject Category Biotechnology & Applied Microbiology
Document Delivery Number 180XO
Unique Article Identifier WOS:000321632700038
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