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| Authors | Ma, JB; Xiao, XL; Li, L; Maggio, A; Zhang, DY; Mohamad, OAA; Van Oosten, M; Huang, G; Sun, YF; Tian, CY; Yao, YA |
| Author Full Name | Ma, Jinbiao; Xiao, Xinlong; Li, Li; Maggio, Albino; Zhang, Dayong; Mohamad, Osama Abdalla Abdelshafy; Van Oosten, Michael; Huang, Gang; Sun, Yufang; Tian, Changyan; Yao, Yinan |
| Title | Large-scale de novo transcriptome analysis reveals specific gene expression and novel simple sequence repeats markers in salinized roots of the euhalophyte Salicornia europaea |
| Source | ACTA PHYSIOLOGIAE PLANTARUM |
| Language | English |
| Document Type | Article |
| Author Keywords | Abiotic stress; Illumina/Solexa sequencing; Salicornia europaea root; Transcriptome; qRT-PCR |
| Keywords Plus | CONFERRED SALT TOLERANCE; PROLINE ACCUMULATION; ARABIDOPSIS-THALIANA; TRANSGENIC TOBACCO; MOLECULAR-BIOLOGY; NA+/H+ ANTIPORTER; STRESS TOLERANCE; HIGHER-PLANTS; HEAVY-METAL; RNA-SEQ |
| Abstract | Glycophytic plants suffer from severe stress and injury when roots are exposed to high salinity in the rhizosphere. In contrast, the euhalophyte Salicornia europaea grows well at 200 mM NaCl and can withstand up to 1000 mM NaCl in the root zone. Analysis of gene expression profiles and the underlying molecular mechanisms responsible for this tolerance have been largely overlooked. Using the Illumina sequencing platform and the short-reads assembly programme Trinity, we generated a total of 40 and 39 million clean reads and further 140,086 and 122,728 unigenes from the 200 mM NaCl and 0 mM NaCl treated tissues of S. europaea roots, respectively. All unigenes in this study were functionally annotated within context of the COG, GO and KEGG pathways. Unigene functional annotation analysis allowed us to identify hundreds of ion transporters related to homeostasis and osmotic adaptation as well as a variety of proteins related to cation, amino acid, lipid and sugar transport. We found significant enrichment in response to stress including the functional categories of |
| Author Address | [Ma, Jinbiao; Xiao, Xinlong; Li, Li; Mohamad, Osama Abdalla Abdelshafy; Huang, Gang; Sun, Yufang; Tian, Changyan; Yao, Yinan] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, Key Lab Biogeog & Bioresource Arid Land, Urumqi 830011, Peoples R China; [Xiao, Xinlong; Sun, Yufang] Univ Chinese Acad Sci, Beijing 100049, Peoples R China; [Ma, Jinbiao] Shanghai Key Lab Bioenergy Crops, Shanghai, Peoples R China; [Maggio, Albino; Van Oosten, Michael] Univ Naples Federico II, Dept Agr Sci, Via Univ 100, I-80055 Portici, Italy; [Zhang, Dayong] Jiangsu Acad Agr Sci, Inst Agrobiotechnol, Prov Key Lab Agrobiol, Nanjing 210014, Jiangsu, Peoples R China; [Mohamad, Osama Abdalla Abdelshafy] Arish Univ, Inst Post Grad Environm Studies, Dept Environm Sci, North Sinai 45511, Egypt |
| Reprint Address | Tian, CY; Yao, YA (corresponding author), Chinese Acad Sci, Xinjiang Inst Ecol & Geog, Key Lab Biogeog & Bioresource Arid Land, Urumqi 830011, Peoples R China. |
| E-mail Address | tiancy@ms.xjb.ac.cn; yaoya@ms.xjb.ac.cn |
| ResearcherID Number | XIAO, Xinlong/I-6330-2012 |
| ORCID Number | ABDELSHAFY MOHAMED, OSAMA ABDALLA/0000-0002-2234-8273 |
| Funding Agency and Grant Number | Natural Science Foundation in ChinaNational Natural Science Foundation of China (NSFC) [U1703106]; Youth Innovation Promotion Association, CAS [2016381]; Open Fund of the Shanghai Key Laboratory of Bio-Energy Crops |
| Funding Text | This work was supported by Natural Science Foundation in China (Grant no. U1703106), Youth Innovation Promotion Association, CAS (2016381), and the Open Fund of the Shanghai Key Laboratory of Bio-Energy Crops. |
| Times Cited | 1 |
| Total Times Cited Count (WoS, BCI, and CSCD) | 1 |
| Publisher | SPRINGER HEIDELBERG |
| Publisher City | HEIDELBERG |
| Publisher Address | TIERGARTENSTRASSE 17, D-69121 HEIDELBERG, GERMANY |
| ISSN | 0137-5881 |
| 29-Character Source Abbreviation | ACTA PHYSIOL PLANT |
| ISO Source Abbreviation | Acta Physiol. Plant. |
| Publication Date | AUG |
| Year Published | 2018 |
| Volume | 40 |
| Issue | 8 |
| Article Number | 140 |
| Digital Object Identifier (DOI) | 10.1007/s11738-018-2702-z |
| Page Count | 15 |
| Web of Science Category | Plant Sciences |
| Subject Category | Plant Sciences |
| Document Delivery Number | GM7IZ |
| Unique Article Identifier | WOS:000438359400001 |
| Plants associated with this reference |