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Authors Abla, M; Zha, X; Wang, Y; Wang, XY; Gao, F; Zhou, YJ; Feng, JC
Author Full Name Abla, Merhaba; Zha, Xi; Wang, Ying; Wang, Xiao Yang; Gao, Fei; Zhou, Yijun; Feng, Jinchao
Title Characterization of the complete chloroplast genome of Nitraria tangutorum, a desert shrub
Source JOURNAL OF GENETICS
Language English
Document Type Article
Author Keywords chloroplast genome; simple sequence repeats analysis; phylogenetic analysis; Nitraria tangutorum
Keywords Plus SALINITY; BOBR.; ANTIOXIDANT; METABOLISM
Abstract The chloroplast genome sequence of Nitraria tangutorum, a desert shrub, was sequenced using high-throughput sequencing technology and analysed phylogenetically in the present study. The chloroplast genome is 159,414 bp in length, including a large single copy region of 87,924 bp and small single copy region of 18,318 bp, and a pair of inverted repeat regions of 26,586 bp. The chloroplast genome contains 110 unique genes, including 77 protein-coding genes, four ribosomal RNA genes, and 29 tRNA genes. Most of these genes are present as a single copy and in two or more copies 19 genes occurred. Seventeen genes have one intron, and clpP and ycf3 genes contain two introns. A total of 81 simple sequence repeats (SSRs) were identified, most of them were found to be mononucleotide repeats composed of A/T. In addition to SSRs, 66 repeats were identified, including 41 tandem repeats, 10 palindromic repeats, and 15 forward repeats. The phylogenetic analysis based on 54 protein-coding genes demonstrated a close relationship between N. tangutorum and other plant species in Sapindales. The complete chloroplast genome sequence of N. tangutorum will provide important data for further study of taxonomy and systematics of the genus Nitraria.
Author Address [Abla, Merhaba; Zha, Xi; Wang, Ying; Wang, Xiao Yang; Gao, Fei; Zhou, Yijun; Feng, Jinchao] Minzu Univ China, Coll Life & Environm Sci, Beijing 100081, Peoples R China
Reprint Address Gao, F (corresponding author), Minzu Univ China, Coll Life & Environm Sci, Beijing 100081, Peoples R China.
E-mail Address gaofei@muc.edu.cn
ORCID Number Gao, Fei/0000-0003-3600-4970
Funding Agency and Grant Number National Natural Science Foundation of ChinaNational Natural Science Foundation of China [31670335, 31570407, 31770363]; Ministry of Education of China through 111 [B08044, Yldxxk201819]
Funding Text This work was financially supported by the National Natural Science Foundation of China (31670335, 31570407, and 31770363) and the Ministry of Education of China through 111 and 'Double First-Class'projects, grant number B08044 and Yldxxk201819.
Times Cited 4
Total Times Cited Count (WoS, BCI, and CSCD) 4
Publisher INDIAN ACAD SCIENCES
Publisher City BANGALORE
Publisher Address C V RAMAN AVENUE, SADASHIVANAGAR, P B #8005, BANGALORE 560 080, INDIA
ISSN 0022-1333
29-Character Source Abbreviation J GENET
ISO Source Abbreviation J. Genet.
Publication Date SEP
Year Published 2019
Volume 98
Issue 3
Article Number 91
Digital Object Identifier (DOI) 10.1007/s12041-019-1135-9
Page Count 6
Web of Science Category Genetics & Heredity
Subject Category Genetics & Heredity
Document Delivery Number IW3VU
Unique Article Identifier WOS:000484910600002
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